Skip to main content

parallelization - ParallelTable and Precision


I'm using ParallelTable[] to calculate a function over a range of my parameters , ($\omega,\ell$). This seems to be working well (in terms of speed increase) except for some strange Precision issues.


I set the $MinPrecision=40 at the start of the notebook as well as my working precision, precision goal and accuracy goal for some computations later in the notebook as


 wp=$MinPrecision;

ac=$MinPrecision-8;
pg=wp/2;

The rest of my code basically defines some helper functions before going on to the main function (that I feed into ParallelTable). This main function uses the helper functions along with NDSolve and NIntegrate to do some computations, and it's in these that I feed the Working Precision->wp ,AccuracyGoal->ac, PrecisionGoal->pg.


I have used DistributeDefinitions on all my variables, helper functions, and the main function, and even on $MinPrecision, also all my initial conditions for NDSolve have N[...,wp] wrapped around them, but still when I use ParallelTable[...] I get errors:


 Precision::precsm. Requested precision 39.153977328439204` is smaller than $MinPrecision. 

I don't get any such error when I simply use Do[...] or Table[..] on my main function, and indeed the results differ at the 33rd decimal place, which is the decimal the above number is precision too. I have no idea what this number is unfortunately, it doesn't look like any of my outputs or inputs.


I just don't understand how this could not crop up with the non-parallelized forms, but crop up with parallelized?


Minimal Example



This is much simpler than my code, but I think it still captures it and the problem:


Definitions:


M = 1;
$MinPrecision = 40;
wp = $MinPrecision;
ac = $MinPrecision - 8;
pg = wp/2;
rinf = 15000;

The main function to be parallelized:



dGenBessE[\[Omega]_?NumericQ, l_?IntegerQ] := 
Block[{\[CapitalPhi]out, init, dinit},

init = 0.00006630728036817007679447778124486601253323 +
6.913102762021489976135937610105907096265*10^-6 I;
dinit = -6.958226432502243329110910813935678705519*10^-7 +
6.631148430876236565520382557577187147081*10^-6 I;

\[CapitalPhi]out[\[Omega], l] = \[CapitalPhi] /.
Block[{$MaxExtraPrecision = 100},

NDSolve[{\[CapitalPhi]''[r] + (2 (r - M))/(
r (r - 2 M)) \[CapitalPhi]'[
r] + ((\[Omega]^2 r^2)/(r - 2 M)^2 - (l (l + 1))/(
r (r - 2 M))) \[CapitalPhi][r] ==
0, \[CapitalPhi][rinf] ==
N[init, wp], \[CapitalPhi]'[rinf] ==
N[dinit, wp]}, \[CapitalPhi], {r, 30, 40},
WorkingPrecision -> wp, AccuracyGoal -> ac,
PrecisionGoal -> pg, MaxSteps -> \[Infinity]]][[1]];
Print["For \[Omega]=", \[Omega], " and l=", l, ": "];

Print["Kernel ID: ", $KernelID];
Print["Precision of init: ", Precision[init]];
Print["Precision of dinit: ", Precision[dinit]];
Print["\[CapitalPhi]out at 35=" ,
N[\[CapitalPhi]out[\[Omega], l][35], wp] ];
Print["Precision of \[CapitalPhi]out: ",
Precision[\[CapitalPhi]out[\[Omega], l][35]]];
]

Do Paralleization prereqs:



LaunchKernels[4]
DistributeDefinitions[M, rinf, wp, ac, pg, $MinPrecision,dGenBessE];

Attempt to run it with Paralleize for two different values:


Parallelize[{dGenBessE[1/10, 0], dGenBessE[1/10, 1]}] // AbsoluteTiming

Result


For me this leads to a


Precision::precsm: Requested precision 38.95475956978393` is smaller than   $MinPrecision. Using $MinPrecision instead.

Answer




I think your problem arises because the value of $MinPrecision is not distributed correctly (If I remember correctly none of the variables in the System context are distributed automatically).


So we have to do this by hand


ParallelEvaluate[$MinPrecision = 40]

Parallelize[{dGenBessE[1/10, 0], dGenBessE[1/10, 1]}] // AbsoluteTiming

Should now work without problems.


Also, presonally I would write the last example as


ParallelMap[dGenBessE[1/10, #]&,{0,1}] // AbsoluteTiming


or


Parallelize@Scan[dGenBessE[1/10, #] &, {0, 1}]

depending on whether you need to return values or not.


Comments

Popular posts from this blog

plotting - How to draw lines between specified dots on ListPlot?

I would like to create a plot where I have unconnected dots and some connected. So far, I have figured out how to draw the dots. My code is the following: ListPlot[{{1, 1}, {2, 2}, {3, 3}, {4, 4}, {1, 4}, {2, 5}, {3, 6}, {4, 7}, {1, 7}, {2, 8}, {3, 9}, {4, 10}, {1, 10}, {2, 11}, {3, 12}, {4,13}, {2.5, 7}}, Ticks -> {{1, 2, 3, 4}, None}, AxesStyle -> Thin, TicksStyle -> Directive[Black, Bold, 12], Mesh -> Full] I have thought using ListLinePlot command, but I don't know how to specify to the command to draw only selected lines between the dots. Do have any suggestions/hints on how to do that? Thank you. Answer One possibility would be to use Epilog with Line : ListPlot[ {{1, 1}, {2, 2}, {3, 3}, {4, 4}, {1, 4}, {2, 5}, {3, 6}, {4, 7}, {1, 7}, {2, 8}, {3, 9}, {4, 10}, {1, 10}, {2, 11}, {3, 12}, {4, 13}, {2.5, 7}}, Ticks -> {{1, 2, 3, 4}, None}, AxesStyle -> Thin, TicksStyle -> Directive[Black, Bold, 12], Mesh -> Full, Epilog -> { Line[ ...

dynamic - How can I make a clickable ArrayPlot that returns input?

I would like to create a dynamic ArrayPlot so that the rectangles, when clicked, provide the input. Can I use ArrayPlot for this? Or is there something else I should have to use? Answer ArrayPlot is much more than just a simple array like Grid : it represents a ranged 2D dataset, and its visualization can be finetuned by options like DataReversed and DataRange . These features make it quite complicated to reproduce the same layout and order with Grid . Here I offer AnnotatedArrayPlot which comes in handy when your dataset is more than just a flat 2D array. The dynamic interface allows highlighting individual cells and possibly interacting with them. AnnotatedArrayPlot works the same way as ArrayPlot and accepts the same options plus Enabled , HighlightCoordinates , HighlightStyle and HighlightElementFunction . data = {{Missing["HasSomeMoreData"], GrayLevel[ 1], {RGBColor[0, 1, 1], RGBColor[0, 0, 1], GrayLevel[1]}, RGBColor[0, 1, 0]}, {GrayLevel[0], GrayLevel...

Is there a way to do conditional matrix loop using 'continue'

I have the following: n = 3; m = 5; ww = RandomReal[{0, 0.1}, {n, n}]; uu = RandomReal[{0, 1}, {m, n}]; pp = RandomReal[{0, 1}, {n, n}]; ss = RandomInteger[{0, 5}, {m, n}]; Grid[{{"ww", "uu", "pp", "ss"}, {ww // TableForm, uu // TableForm, pp // TableForm, ss // TableForm}}, Spacings -> {5, 2}, Dividers -> All] where I would like to look at every element of matrix ss and produce a matrix tt , with zeroes at the locations in ss which have zeroes, and in all other positions do the following: tt = (-1/Subscript[ww, m]) Log[(1 - uu)/(Subscript[pp, m - 1])], where Subscript[ww, m] is the value at index of ww matrix and where Subscript[pp, m - 1] is the value at index-1 of pp matrix. So for example if the first value ever read from matrix ss happens to be 2, then value taken from matrix ww would be from the row 2, but from pp would be from row 1. Also how to tell difference between a 0 as a valid value from within the matrix elemen...