Skip to main content

How to align rotated images vertically



I have recorded images of a calibration target which I use to determine the resolution of a camera. For that I measure the distance of the parallel bright bars by measuring the brightness variation along the center of the bars perpendicular to their long side. The thickness of the bars is given.


Usually I am not able to align the target exactly in vertical direction.


An example image is given here:


enter image description here


To turn the image into the vertical direction I used a code developed by Markus van Almsick.


Do you know another alternative solution for doing such an alignment automatically?


VerticalAlignment[img_Image] :=
Module[
{contours = ImageAdjust@GradientFilter[img, 1],
dims = ImageDimensions[img], lines, intersections, phis},

lines =
Map[(# - dims/2) &, ImageLines[contours, MaxFeatures -> 12], {-2}];
intersections = Apply[
Replace[
RegionIntersection[InfiniteLine[#1], InfiniteLine[#2]],
{Point[vec : {_, _}] :> ToPolarCoordinates[vec],
EmptyRegion[2] :> {\[Infinity], ArcTan @@ Subtract @@ #1}}
] &,
Subsets[lines, {2}],
{1}

];
phis = Select[
Cases[intersections, {_?(# > Norm[dims] &), phi_} :>
Mod[phi, Pi]], (Pi/3 < # < 2 Pi/3) &];
If[
phis == {},
img,
ImageRotate[img, Pi/2 - Median[phis], "MaxAreaCropping"]
]
]


VerticalAlignment[image] gives for the upper example:


enter image description here


Now I can do the following (mentioned in the beginning):


ListLinePlot[data[[All, 58, 1]], ImageSize -> Medium]

enter image description here


and determine the peak positions and their distances.



Answer



Using Radon instead of ImageLines@EdgeDetect@. No need for thinning the lines.



i     = ImageAdjust@Import@"http://i.stack.imgur.com/rRCH5.png";
cc = ComponentMeasurements[MaxDetect[r = Radon@i, .1], "Centroid"];
angle = -cc[[All, 2, 1]] Pi/First@ImageDimensions@r// Mean;
ImageAdjust@ImageRotate[i, angle, Background -> Black]

Mathematica graphics


The 0.1 in MaxDetect[r = Radon@i, .1] is empirical, but I found it working very well when using Radon[ ]. Otherwise you may find FindThreshold[ ] useful for estimating an ad hoc value.


Showing the alignment:


horline[i_Image, row_] := Graphics[{Orange, Thick, 
Line[{{0, row}, {Last@ImageDimensions@i, row}}]}]

With[{j = ImageAdjust@ImageRotate[i, angle, Background -> Black]},
Show[j, horline[j, #] & /@ cc[[All, 2, 2]]]]

Mathematica graphics


Comments

Popular posts from this blog

plotting - Filling between two spheres in SphericalPlot3D

Manipulate[ SphericalPlot3D[{1, 2 - n}, {θ, 0, Pi}, {ϕ, 0, 1.5 Pi}, Mesh -> None, PlotPoints -> 15, PlotRange -> {-2.2, 2.2}], {n, 0, 1}] I cant' seem to be able to make a filling between two spheres. I've already tried the obvious Filling -> {1 -> {2}} but Mathematica doesn't seem to like that option. Is there any easy way around this or ... Answer There is no built-in filling in SphericalPlot3D . One option is to use ParametricPlot3D to draw the surfaces between the two shells: Manipulate[ Show[SphericalPlot3D[{1, 2 - n}, {θ, 0, Pi}, {ϕ, 0, 1.5 Pi}, PlotPoints -> 15, PlotRange -> {-2.2, 2.2}], ParametricPlot3D[{ r {Sin[t] Cos[1.5 Pi], Sin[t] Sin[1.5 Pi], Cos[t]}, r {Sin[t] Cos[0 Pi], Sin[t] Sin[0 Pi], Cos[t]}}, {r, 1, 2 - n}, {t, 0, Pi}, PlotStyle -> Yellow, Mesh -> {2, 15}]], {n, 0, 1}]

plotting - Plot 4D data with color as 4th dimension

I have a list of 4D data (x position, y position, amplitude, wavelength). I want to plot x, y, and amplitude on a 3D plot and have the color of the points correspond to the wavelength. I have seen many examples using functions to define color but my wavelength cannot be expressed by an analytic function. Is there a simple way to do this? Answer Here a another possible way to visualize 4D data: data = Flatten[Table[{x, y, x^2 + y^2, Sin[x - y]}, {x, -Pi, Pi,Pi/10}, {y,-Pi,Pi, Pi/10}], 1]; You can use the function Point along with VertexColors . Now the points are places using the first three elements and the color is determined by the fourth. In this case I used Hue, but you can use whatever you prefer. Graphics3D[ Point[data[[All, 1 ;; 3]], VertexColors -> Hue /@ data[[All, 4]]], Axes -> True, BoxRatios -> {1, 1, 1/GoldenRatio}]

plotting - Mathematica: 3D plot based on combined 2D graphs

I have several sigmoidal fits to 3 different datasets, with mean fit predictions plus the 95% confidence limits (not symmetrical around the mean) and the actual data. I would now like to show these different 2D plots projected in 3D as in but then using proper perspective. In the link here they give some solutions to combine the plots using isometric perspective, but I would like to use proper 3 point perspective. Any thoughts? Also any way to show the mean points per time point for each series plus or minus the standard error on the mean would be cool too, either using points+vertical bars, or using spheres plus tubes. Below are some test data and the fit function I am using. Note that I am working on a logit(proportion) scale and that the final vertical scale is Log10(percentage). (* some test data *) data = Table[Null, {i, 4}]; data[[1]] = {{1, -5.8}, {2, -5.4}, {3, -0.8}, {4, -0.2}, {5, 4.6}, {1, -6.4}, {2, -5.6}, {3, -0.7}, {4, 0.04}, {5, 1.0}, {1, -6.8}, {2, -4.7}, {3, -1.