Skip to main content

image processing - Help find a bright object on Mars!


In today's news, scientists found a bright object on one of Curiosity's photos (it's near the bottom of the picture below). It's a bit tricky to find - I actually spent quite some time staring at the picture before I saw it.


Bright object


The question, then, is how one can systematically search for such anomalies. It should be harder than famous How do i find Waldo problem, as we do not necessarily know what we are looking for upfront!


Unfortunately, I know next to nothing about image processing. Playing with different Mathematica functions, I managed to find a transformation which makes the anomaly more visible at the third image after color separation -- but I knew what I was looking for already, so I played with the numerical parameter for Binarize until I found a value (0.55) that separated the bright object from the noise nicely. I'm wondering how can I do such analysis in a more systematic ways.


img = Import["http://www.nasa.gov/images/content/694809main_pia16225-43_946-710.jpg"];
Colorize @ MorphologicalComponents @ Binarize[#, .55] & /@ ColorSeparate[img]

enter image description here



Any pointers would be much appreciated!



Answer



Here's another, slightly more scientific method. One that works for many kinds of anomalies (darker, brighter, different hue, different saturation).


First, I use a part of the image that only contains sand as my training set (I use the high-res image from the NASA site instead of the one linked in the question. The results are similar, but I get much saner probabilities without the JPEG artifacts):


img = Import["http://www.nasa.gov/images/content/694811main_pia16225-43_full.jpg"];
sandSample = ImageTake[img, {0, 200}, {1000, 1200}]

enter image description here


We can visualize the distribution of the R/G channels in this sample:


SmoothHistogram3D[sandPixels[[All, {1, 2}]], Automatic, "PDF",  AxesLabel -> {"R", "G", "PDF"}]


enter image description here


The histogram looks a bit skewed, but it's close enough to treat it as gaussian. So I'll assume for simplicity that the "sand" texture is a gaussian random variable where each pixel is independent. Then I can estimate it's distribution like this:


sandPixels = Flatten[ImageData[sandSample], 1];
dist = MultinormalDistribution[{mR, mG, mB}, {{sRR, sRG, sRB}, {sRG, sGG, SGB}, {sRB, sGB, sBB}}];
edist = EstimatedDistribution[sandPixels, dist];
logPdf = PowerExpand@Log@PDF[edist, {r, g, b}]

Now I can just apply the PDF of this distribution to the complete image (I use the Log PDF to prevent overflows/underflows):


rgb = ImageData /@ ColorSeparate[GaussianFilter[img, 3]];

p = logPdf /. {r -> rgb[[1]], g -> rgb[[2]], b -> rgb[[3]]};

We can visualize the negative log PDF with an appropriate scaling factor:


Image[-p/20]

enter image description here


Here we can see:



  • The sand areas are dark - these pixels fit the estimated distribution from the sand sample

  • Most of the Curiosity area in the image is very bright - it's very unlikely that these pixels are from the same distribution


  • The shadows of the Curiosity probe are gray - they're not from the same distribution as the sand sample, but still closer than the anomaly

  • The anomaly we're looking is very bright - It can be detected easily


To find the sand/non-sand areas, I use MorphologicalBinarize. For the sand pixels, the PDF is > 0 everywhere, for the anomaly pixels, it's < 0, so finding a threshold isn't very hard.


bin = MorphologicalBinarize[Image[-p], {0, 10}]

enter image description here


Here, areas where the Log[PDF] < -10 are selected. PDF < e^-10 is very unlikely, so you won't have to check too many false positives.


Final step: find connected components, ignoring components above 10000 Pixels (that's the rover) and mark them in the image:


components = 

ComponentMeasurements[bin, {"Area", "Centroid", "CaliperLength"},
10 < #1 < 10000 &][[All, 2]]
Show[Image[img],
Graphics[{Red, AbsoluteThickness[5], Circle[#[[2]], 2 #[[3]]] & /@ components}]]

enter image description here


Obviously, the assumption that "sand pixels" are independent gaussian random variables is a gross oversimplification, but the general method would work for other distributions as well. Also, r/g/b values alone are probably not the best features to find alien objects. Normally you'd use more features (e.g. a set of Gabor filters)


Comments

Popular posts from this blog

plotting - Plot 4D data with color as 4th dimension

I have a list of 4D data (x position, y position, amplitude, wavelength). I want to plot x, y, and amplitude on a 3D plot and have the color of the points correspond to the wavelength. I have seen many examples using functions to define color but my wavelength cannot be expressed by an analytic function. Is there a simple way to do this? Answer Here a another possible way to visualize 4D data: data = Flatten[Table[{x, y, x^2 + y^2, Sin[x - y]}, {x, -Pi, Pi,Pi/10}, {y,-Pi,Pi, Pi/10}], 1]; You can use the function Point along with VertexColors . Now the points are places using the first three elements and the color is determined by the fourth. In this case I used Hue, but you can use whatever you prefer. Graphics3D[ Point[data[[All, 1 ;; 3]], VertexColors -> Hue /@ data[[All, 4]]], Axes -> True, BoxRatios -> {1, 1, 1/GoldenRatio}]

plotting - Filling between two spheres in SphericalPlot3D

Manipulate[ SphericalPlot3D[{1, 2 - n}, {θ, 0, Pi}, {ϕ, 0, 1.5 Pi}, Mesh -> None, PlotPoints -> 15, PlotRange -> {-2.2, 2.2}], {n, 0, 1}] I cant' seem to be able to make a filling between two spheres. I've already tried the obvious Filling -> {1 -> {2}} but Mathematica doesn't seem to like that option. Is there any easy way around this or ... Answer There is no built-in filling in SphericalPlot3D . One option is to use ParametricPlot3D to draw the surfaces between the two shells: Manipulate[ Show[SphericalPlot3D[{1, 2 - n}, {θ, 0, Pi}, {ϕ, 0, 1.5 Pi}, PlotPoints -> 15, PlotRange -> {-2.2, 2.2}], ParametricPlot3D[{ r {Sin[t] Cos[1.5 Pi], Sin[t] Sin[1.5 Pi], Cos[t]}, r {Sin[t] Cos[0 Pi], Sin[t] Sin[0 Pi], Cos[t]}}, {r, 1, 2 - n}, {t, 0, Pi}, PlotStyle -> Yellow, Mesh -> {2, 15}]], {n, 0, 1}]

plotting - Mathematica: 3D plot based on combined 2D graphs

I have several sigmoidal fits to 3 different datasets, with mean fit predictions plus the 95% confidence limits (not symmetrical around the mean) and the actual data. I would now like to show these different 2D plots projected in 3D as in but then using proper perspective. In the link here they give some solutions to combine the plots using isometric perspective, but I would like to use proper 3 point perspective. Any thoughts? Also any way to show the mean points per time point for each series plus or minus the standard error on the mean would be cool too, either using points+vertical bars, or using spheres plus tubes. Below are some test data and the fit function I am using. Note that I am working on a logit(proportion) scale and that the final vertical scale is Log10(percentage). (* some test data *) data = Table[Null, {i, 4}]; data[[1]] = {{1, -5.8}, {2, -5.4}, {3, -0.8}, {4, -0.2}, {5, 4.6}, {1, -6.4}, {2, -5.6}, {3, -0.7}, {4, 0.04}, {5, 1.0}, {1, -6.8}, {2, -4.7}, {3, -1....