Skip to main content

parallelization - Passing Package Dependencies to Subkernels


Say I have a function f[x_,...]:=... in a *.wl-Package form that depends on a bunch of Packages (some other *.wl files), and say I want to call this function f several times in parallel. I am currently using a set-up of the following form


LaunchKernels[2];
ParallelNeeds["Privatef`",".../f_file.wl"];


ParallelTable[
output[i]=f[i];
,{i,1,10}];

where i is just supposed to represent a set of parameters. The function f itself is of the form


BeginPackage["Privatef`"]

f

Begin["fenv`"]

Needs["other Packages"]

some code

End[]

EndPackage[]

Now, my problem is that the function f is distributed into the different subkernels I generated, though, the other Packages don't seem to load in each subkernel. I have tried to also use ParallelNeeds on these additional Packages, but without success. So how do I get Mathematica to load each additional Package that f requires in each subkernel that was launched?



Answer




Are the packages you need in the $Path?


If not, the following may be the simplest solution:




  • Create a package file (.m or .wl) which simply modifies the $Path.


    BeginPackage["PathLoader`"]
    $Path = Join[$Path, {"/path/one", "/path/two"}];
    EndPackage[]

    The only purpose of the BeginPackage/EndPackage here is to ensure that (Parallel)Needs won't complain about "context not created".





  • Put this in a standard location, e.g. $UserBaseDirectory/Applications/PathLoader.m.




  • Start your session with


    Needs["PathLoader`"]
    ParallelNeeds["PathLoader`"]



Now $Path will contain all your directories both on the main kernel and on the subkernels.


I use similar (but more complicated) workarounds for Kernel/init.m not being loaded on any subkernels.


Comments

Popular posts from this blog

front end - keyboard shortcut to invoke Insert new matrix

I frequently need to type in some matrices, and the menu command Insert > Table/Matrix > New... allows matrices with lines drawn between columns and rows, which is very helpful. I would like to make a keyboard shortcut for it, but cannot find the relevant frontend token command (4209405) for it. Since the FullForm[] and InputForm[] of matrices with lines drawn between rows and columns is the same as those without lines, it's hard to do this via 3rd party system-wide text expanders (e.g. autohotkey or atext on mac). How does one assign a keyboard shortcut for the menu item Insert > Table/Matrix > New... , preferably using only mathematica? Thanks! Answer In the MenuSetup.tr (for linux located in the $InstallationDirectory/SystemFiles/FrontEnd/TextResources/X/ directory), I changed the line MenuItem["&New...", "CreateGridBoxDialog"] to read MenuItem["&New...", "CreateGridBoxDialog", MenuKey["m", Modifiers-...

How to thread a list

I have data in format data = {{a1, a2}, {b1, b2}, {c1, c2}, {d1, d2}} Tableform: I want to thread it to : tdata = {{{a1, b1}, {a2, b2}}, {{a1, c1}, {a2, c2}}, {{a1, d1}, {a2, d2}}} Tableform: And I would like to do better then pseudofunction[n_] := Transpose[{data2[[1]], data2[[n]]}]; SetAttributes[pseudofunction, Listable]; Range[2, 4] // pseudofunction Here is my benchmark data, where data3 is normal sample of real data. data3 = Drop[ExcelWorkBook[[Column1 ;; Column4]], None, 1]; data2 = {a #, b #, c #, d #} & /@ Range[1, 10^5]; data = RandomReal[{0, 1}, {10^6, 4}]; Here is my benchmark code kptnw[list_] := Transpose[{Table[First@#, {Length@# - 1}], Rest@#}, {3, 1, 2}] &@list kptnw2[list_] := Transpose[{ConstantArray[First@#, Length@# - 1], Rest@#}, {3, 1, 2}] &@list OleksandrR[list_] := Flatten[Outer[List, List@First[list], Rest[list], 1], {{2}, {1, 4}}] paradox2[list_] := Partition[Riffle[list[[1]], #], 2] & /@ Drop[list, 1] RM[list_] := FoldList[Transpose[{First@li...

dynamic - How can I make a clickable ArrayPlot that returns input?

I would like to create a dynamic ArrayPlot so that the rectangles, when clicked, provide the input. Can I use ArrayPlot for this? Or is there something else I should have to use? Answer ArrayPlot is much more than just a simple array like Grid : it represents a ranged 2D dataset, and its visualization can be finetuned by options like DataReversed and DataRange . These features make it quite complicated to reproduce the same layout and order with Grid . Here I offer AnnotatedArrayPlot which comes in handy when your dataset is more than just a flat 2D array. The dynamic interface allows highlighting individual cells and possibly interacting with them. AnnotatedArrayPlot works the same way as ArrayPlot and accepts the same options plus Enabled , HighlightCoordinates , HighlightStyle and HighlightElementFunction . data = {{Missing["HasSomeMoreData"], GrayLevel[ 1], {RGBColor[0, 1, 1], RGBColor[0, 0, 1], GrayLevel[1]}, RGBColor[0, 1, 0]}, {GrayLevel[0], GrayLevel...