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performance tuning - How to read data file quickly?


I have a tab separated value file with 10 million rows each of which has three tab separated values. The first value is a string, the second an integer, and the third another string. How to read efficiently (in terms of timing and memory footprint) the $n^{th}$ to $(n+100)^{th}$ rows of the file into Mathematica as


{
{_String, _Integer, _String},
...
}


?



Answer



For a one-off read you can Skip a number of records:


str = OpenRead["test.tsv"];
Skip[str, Record, n - 1];
data = ReadList[str, {Record, Number, Record}, 100, RecordSeparators -> {"\t", "\n"}];
Close[str];

If you will be reading from the same file many times, it may be worth building an index you can use with SetStreamPosition



str = OpenRead["test.tsv"];
index = Table[pos = StreamPosition[str]; Skip[str, Record]; pos, {100000}];

readlines[n_, m_] := Block[{},
SetStreamPosition[str, index[[n]]];
ReadList[str, {Record, Number, Record}, m, RecordSeparators -> {"\t", "\n"}]]

data = readlines[50000,100]

On my PC building the index took about half a second for 10^5 rows in the file, assuming it scales linearly this would be about a minute for 10^7 rows. So this is only worth doing if you are going to be doing a lot of reads.



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