mac os x - MathLink linking error after OS X 10.9 (Mavericks) upgrade

After macosx 10.9 mavericks upgrade i have a compilation problem, you can see below. Even the examples given in /Applications/Mathematica.app/SystemFiles/Links/MathLink/DeveloperKit/MacOSX-x86-64/MathLinkExamples are not compiling anymore. It throws an error about the architecture. I also followed the solution given by MathLink compile errors, reinstalling the Xcode and command line tools. It didnt work.

I also checked the libMLi3.a for architecture and seems like it is ok

libMLi3.a: Mach-O universal binary with 2 architectures libMLi3.a (for architecture i386): current ar archive random library libMLi3.a (for architecture x86_64): current ar archive random library

and clang/gcc as well

Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) Target: x86_64-apple-darwin13.0.0 Thread model: posix

gcc -v Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) Target: x86_64-apple-darwin13.0.0 Thread model: posix

which are the latest.

I wonder if anyone manages to compile the MathLink examples after the 10.9 upgrade?

Here is the error message:

/Applications/Mathematica.app/SystemFiles/Links/MathLink/DeveloperKit/MacOSX-x86-64/MathLinkExamples]:>
 g++  -I/Applications/Mathematica.app/SystemFiles/Links/MathLink/DeveloperKit/MacOSX-x86-64/MathLinkExamples/../CompilerAdditions \
addtwotm.o addtwo.o -L/Applications/Mathematica.app/SystemFiles/Links/MathLink/DeveloperKit/MacOSX-x86-64/MathLinkExamples/../CompilerAdditions \
-lMLi3 -lstdc++ -framework Foundation -o addtwo
Undefined symbols for architecture x86_64:
  "std::string::find_last_of(char const*, unsigned long, unsigned long) const", referenced from:

      MLThreads::DestroyName(std::string&) in libMLi3.a(mlplatformthreads.cpp.o)
  "std::string::find_first_of(char const*, unsigned long, unsigned long) const", referenced from:
      MLThreads::NameValidQ(std::string&) in libMLi3.a(mlplatformthreads.cpp.o)
      MLThreads::DestroyName(std::string&) in libMLi3.a(mlplatformthreads.cpp.o)
  "std::string::find(char const*, unsigned long, unsigned long) const", referenced from:
      _mlipinterfacecontainer_get_domain_names in libMLi3.a(mlipinterface.c.o)
      MLNetwork::MLIPAddress::LoadDomainName(bool) in libMLi3.a(mlipaddress.cpp.o)
      MLNetwork::MLIPAddress::IPV4NameQ(std::string) in libMLi3.a(mlipaddress.cpp.o)
      MLNetwork::MLIPAddress::IPV6NameQ(std::string) in libMLi3.a(mlipaddress.cpp.o)
      MLNetwork::MLIPAddress::AutoconfiguredQ() const in libMLi3.a(mlipaddress.cpp.o)

      _pipe_make in libMLi3.a(_pipe.c.o)
      MLDevices::MLTCPIPDevice::OldConnectServer() in libMLi3.a(mltcpip.cpp.o)
   .
   .
   .
   .
   .
   .
      ...
  NOTE: a missing vtable usually means the first non-inline virtual member function has no definition.

ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)

plotting - Filling between two spheres in SphericalPlot3D

Manipulate[ SphericalPlot3D[{1, 2 - n}, {θ, 0, Pi}, {ϕ, 0, 1.5 Pi}, Mesh -> None, PlotPoints -> 15, PlotRange -> {-2.2, 2.2}], {n, 0, 1}] I cant' seem to be able to make a filling between two spheres. I've already tried the obvious Filling -> {1 -> {2}} but Mathematica doesn't seem to like that option. Is there any easy way around this or ... Answer There is no built-in filling in SphericalPlot3D . One option is to use ParametricPlot3D to draw the surfaces between the two shells: Manipulate[ Show[SphericalPlot3D[{1, 2 - n}, {θ, 0, Pi}, {ϕ, 0, 1.5 Pi}, PlotPoints -> 15, PlotRange -> {-2.2, 2.2}], ParametricPlot3D[{ r {Sin[t] Cos[1.5 Pi], Sin[t] Sin[1.5 Pi], Cos[t]}, r {Sin[t] Cos[0 Pi], Sin[t] Sin[0 Pi], Cos[t]}}, {r, 1, 2 - n}, {t, 0, Pi}, PlotStyle -> Yellow, Mesh -> {2, 15}]], {n, 0, 1}]

plotting - Plot 4D data with color as 4th dimension

I have a list of 4D data (x position, y position, amplitude, wavelength). I want to plot x, y, and amplitude on a 3D plot and have the color of the points correspond to the wavelength. I have seen many examples using functions to define color but my wavelength cannot be expressed by an analytic function. Is there a simple way to do this? Answer Here a another possible way to visualize 4D data: data = Flatten[Table[{x, y, x^2 + y^2, Sin[x - y]}, {x, -Pi, Pi,Pi/10}, {y,-Pi,Pi, Pi/10}], 1]; You can use the function Point along with VertexColors . Now the points are places using the first three elements and the color is determined by the fourth. In this case I used Hue, but you can use whatever you prefer. Graphics3D[ Point[data[[All, 1 ;; 3]], VertexColors -> Hue /@ data[[All, 4]]], Axes -> True, BoxRatios -> {1, 1, 1/GoldenRatio}]

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I have several sigmoidal fits to 3 different datasets, with mean fit predictions plus the 95% confidence limits (not symmetrical around the mean) and the actual data. I would now like to show these different 2D plots projected in 3D as in but then using proper perspective. In the link here they give some solutions to combine the plots using isometric perspective, but I would like to use proper 3 point perspective. Any thoughts? Also any way to show the mean points per time point for each series plus or minus the standard error on the mean would be cool too, either using points+vertical bars, or using spheres plus tubes. Below are some test data and the fit function I am using. Note that I am working on a logit(proportion) scale and that the final vertical scale is Log10(percentage). (* some test data *) data = Table[Null, {i, 4}]; data[[1]] = {{1, -5.8}, {2, -5.4}, {3, -0.8}, {4, -0.2}, {5, 4.6}, {1, -6.4}, {2, -5.6}, {3, -0.7}, {4, 0.04}, {5, 1.0}, {1, -6.8}, {2, -4.7}, {3, -1.

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