Skip to main content

mathematical optimization - Using StepMonitor/EvaluationMonitor with DifferentialEvolution in NMinimize


My question about tracking the progress of a minimisation/fitting process is two-fold:


1. The first part of my question can be considered a slight duplicate/follow-up of this question. There the OP asked what exactly is passed to the StepMonitor-Option when using the "DifferentialEvolution"-method. The answer by Oleksandr R. states that only the fittest individual of each generation is passed. This is fine by me but when I try the following nothing is passed:


data = BlockRandom[SeedRandom[12345]; 
Table[{x, Exp[-2.3 x/(11 + .4 x + x^2)] + RandomReal[{-.5, .5}]},
{x, RandomReal[{1, 15}, 20]}]];


nlm = Reap@NonlinearModelFit[data, Exp[a x/(b + c x)], {a, b, c}, x,
Method -> {NMinimize, Method -> {"DifferentialEvolution"}},
StepMonitor :> Sow[{a, b, c}]]

compare this to the same expression using EvaluationMonitor instead of StepMonitor.


Question: Is what is passed to/by EvaluationMonitor the fittest individual of the current generation (like Oleksandr R. suggested for StepMonitor which sadly seems not to be accurate any more)


Question 2 Is there a straightforward way to pass the value of the fitness/cost-function of said best individual i.e. the squared differences between estimate and data?



Answer



EvaluationMonitor is going to be called whenever the objective function is being evaluated, that is much more often than StepMonitor.



The reason for not getting any points back is that the StepMonitor specification is not propagated to the NMinimize call. Try the following syntax instead


nlm = Reap @ NonlinearModelFit[data, Exp[a x/(b + c x)], {a, b, c}, x, 
Method -> {NMinimize, StepMonitor :> Sow[{a, b, c}],
Method -> "DifferentialEvolution"}]

For the values of the objective function at these points, one could build the sum of squared residuals by hand, but there is also an internal function that can be used (the added factor of two is because in the default 2-norm case the objective function is $\frac12 \bf r \cdot \bf r$, where $\bf r$ is the residual vector).


obj = Optimization`FindFit`ObjectiveFunction[data, Exp[a x/(b + c x)], {a, b, c}, x];
nlm = Reap @ NonlinearModelFit[data, Exp[a x/(b + c x)], {a, b, c}, x,
Method -> {NMinimize, StepMonitor :> Sow[2 obj[{a, b, c}]],
Method -> "DifferentialEvolution"}]

Comments

Popular posts from this blog

plotting - How to draw lines between specified dots on ListPlot?

I would like to create a plot where I have unconnected dots and some connected. So far, I have figured out how to draw the dots. My code is the following: ListPlot[{{1, 1}, {2, 2}, {3, 3}, {4, 4}, {1, 4}, {2, 5}, {3, 6}, {4, 7}, {1, 7}, {2, 8}, {3, 9}, {4, 10}, {1, 10}, {2, 11}, {3, 12}, {4,13}, {2.5, 7}}, Ticks -> {{1, 2, 3, 4}, None}, AxesStyle -> Thin, TicksStyle -> Directive[Black, Bold, 12], Mesh -> Full] I have thought using ListLinePlot command, but I don't know how to specify to the command to draw only selected lines between the dots. Do have any suggestions/hints on how to do that? Thank you. Answer One possibility would be to use Epilog with Line : ListPlot[ {{1, 1}, {2, 2}, {3, 3}, {4, 4}, {1, 4}, {2, 5}, {3, 6}, {4, 7}, {1, 7}, {2, 8}, {3, 9}, {4, 10}, {1, 10}, {2, 11}, {3, 12}, {4, 13}, {2.5, 7}}, Ticks -> {{1, 2, 3, 4}, None}, AxesStyle -> Thin, TicksStyle -> Directive[Black, Bold, 12], Mesh -> Full, Epilog -> { Line[ ...

dynamic - How can I make a clickable ArrayPlot that returns input?

I would like to create a dynamic ArrayPlot so that the rectangles, when clicked, provide the input. Can I use ArrayPlot for this? Or is there something else I should have to use? Answer ArrayPlot is much more than just a simple array like Grid : it represents a ranged 2D dataset, and its visualization can be finetuned by options like DataReversed and DataRange . These features make it quite complicated to reproduce the same layout and order with Grid . Here I offer AnnotatedArrayPlot which comes in handy when your dataset is more than just a flat 2D array. The dynamic interface allows highlighting individual cells and possibly interacting with them. AnnotatedArrayPlot works the same way as ArrayPlot and accepts the same options plus Enabled , HighlightCoordinates , HighlightStyle and HighlightElementFunction . data = {{Missing["HasSomeMoreData"], GrayLevel[ 1], {RGBColor[0, 1, 1], RGBColor[0, 0, 1], GrayLevel[1]}, RGBColor[0, 1, 0]}, {GrayLevel[0], GrayLevel...

list manipulation - Selecting multiple columns from a matrix?

Sample data: data = { {{2013, 1, 1}, 24.13, 167.67, 231.82}, {{2013, 1, 2}, 32.15, 170.92, 225.99}, {{2013, 1, 3}, 35.43, 172.68, 221.67}, {{2013, 1, 4}, 36.73, 173.05, 218.32}, {{2013, 1, 5}, 58.19, 165.96, 197.05}, {{2013, 1, 6}, 69.99, 163.50, 187.52}, {{2013, 1, 7}, 71.37, 154.21, 175.58}, {{2013, 1, 8}, 72.51, 149.66, 163.25}}; I want a DateListPlot with three graphs, so for a matrix formed by columns 1 and 2, one for columns 1 and 3, and 1 for columns 1 and 4. At the moment I'm using this code: data2 = Transpose[{data[[All, 1]], data[[All, 2]]}]; data3 = Transpose[{data[[All, 1]], data[[All, 3]]}]; data4 = Transpose[{data[[All, 1]], data[[All, 4]]}]; DateListPlot[{data2, data3, data4}, Joined -> True, Filling -> {3 -> {1}}] but I have a hunch that this can be done more efficiently. I don't like the Transpose s in particular. Any ideas? edit (for extra credit) What if I need to multiply the second column by 2, which in my solution is simp...