Skip to main content

export - Why does this simple program leak memory?


I have a simple Mathematica program which writes some plots to image files for later conversion into a movie. Unfortunately, the program leaks so much memory that it quickly exhausts all 12G of RAM on my machine. The only way out is to quit the kernel(s).


I can't see why this program shouldn't use a bounded amount of memory. I've read through Debugging memory leaks which unfortunately hasn't helped - the only "heavy" symbol is 'data', whose size is fixed. I don't see what's growing!


Note that the same problem occurs regardless of whether the loop is Map or Do, Parallel- or not. The problem also occurs in both Mathematica 8 and 9, both under Linux.


Help?


(* number of frames *)
n = 1000;

(* just some bogus data *)
makeData[_] := Table[{{x, y} = RandomReal[{-3, 3}, {2}], {y, -x}}, {200}];
data = Array[makeData, n];
(* Export the frames *)
ParallelMap[
Export[
"movie-" <> IntegerString[#, 10, 4] <> ".png",
ListVectorPlot[data[[#]]]] &,
Range[1, n]];


Edit:
Some more information: after running this code (the non-parallel version), I checked the memory usage of the processes involved. The percentages are out of 12GB, so both the frontend and the kernel are consuming quite a bit of memory, while PNG.exe is almost nonexistent.


  PID USER      PR  NI  VIRT  RES  SHR S %CPU %MEM    TIME+  COMMAND            
24575 gredner 20 0 4400 740 588 S 0 0.0 0:00.00 Mathematica
24646 gredner 20 0 3029m 2.3g 22m S 0 20.5 1:43.02 Mathematica
24655 gredner 20 0 3384m 1.6g 14m S 0 13.7 3:31.47 MathKernel
24984 gredner 20 0 387m 7364 2464 S 0 0.1 0:20.92 PNG.exe


Comments

Popular posts from this blog

plotting - How to draw lines between specified dots on ListPlot?

I would like to create a plot where I have unconnected dots and some connected. So far, I have figured out how to draw the dots. My code is the following: ListPlot[{{1, 1}, {2, 2}, {3, 3}, {4, 4}, {1, 4}, {2, 5}, {3, 6}, {4, 7}, {1, 7}, {2, 8}, {3, 9}, {4, 10}, {1, 10}, {2, 11}, {3, 12}, {4,13}, {2.5, 7}}, Ticks -> {{1, 2, 3, 4}, None}, AxesStyle -> Thin, TicksStyle -> Directive[Black, Bold, 12], Mesh -> Full] I have thought using ListLinePlot command, but I don't know how to specify to the command to draw only selected lines between the dots. Do have any suggestions/hints on how to do that? Thank you. Answer One possibility would be to use Epilog with Line : ListPlot[ {{1, 1}, {2, 2}, {3, 3}, {4, 4}, {1, 4}, {2, 5}, {3, 6}, {4, 7}, {1, 7}, {2, 8}, {3, 9}, {4, 10}, {1, 10}, {2, 11}, {3, 12}, {4, 13}, {2.5, 7}}, Ticks -> {{1, 2, 3, 4}, None}, AxesStyle -> Thin, TicksStyle -> Directive[Black, Bold, 12], Mesh -> Full, Epilog -> { Line[ ...

equation solving - Invert and fit implicitly defined curve

I need to fit an implicitly defined curve. I thought I could get some data out of Solve , and then using FindFit . Therefore, I would like to find the relation the parametric curve defined by $F(x,y)=0$: Solve[-(1/2) + 1/2 (0.41202 BesselK[0, 0.1 Sqrt[x^2 + y^2]] + (0.101483 x BesselK[1, 0.1 Sqrt[x^2 + y^2]])/Sqrt[x^2 + y^2]) == 0, y] But I can't get an output: Solve was unable to solve the system with inexact coefficients or the system obtained by direct rationalization of inexact numbers present in the system. Since many of the methods used by Solve require exact input, providing Solve with an exact version of the system may help. >> Edit: In particular, I would like to fit the data coming from the curve with the expression of another curve, and not with a function $f(x)$. In particular, since this clearly looks like a cardioid , I would like it to fit to something like it. What other strategies could I try?

dynamic - How can I make a clickable ArrayPlot that returns input?

I would like to create a dynamic ArrayPlot so that the rectangles, when clicked, provide the input. Can I use ArrayPlot for this? Or is there something else I should have to use? Answer ArrayPlot is much more than just a simple array like Grid : it represents a ranged 2D dataset, and its visualization can be finetuned by options like DataReversed and DataRange . These features make it quite complicated to reproduce the same layout and order with Grid . Here I offer AnnotatedArrayPlot which comes in handy when your dataset is more than just a flat 2D array. The dynamic interface allows highlighting individual cells and possibly interacting with them. AnnotatedArrayPlot works the same way as ArrayPlot and accepts the same options plus Enabled , HighlightCoordinates , HighlightStyle and HighlightElementFunction . data = {{Missing["HasSomeMoreData"], GrayLevel[ 1], {RGBColor[0, 1, 1], RGBColor[0, 0, 1], GrayLevel[1]}, RGBColor[0, 1, 0]}, {GrayLevel[0], GrayLevel...