Skip to main content

Using Java log4j in Mathematica


Someone has a code example of how log4j can be used to create logs in Mathematica?


RLink uses it, as can be checked in initLogger[] function, in this file:


SystemOpen@FileNameJoin@{DirectoryName@DirectoryName@FindFile["RLink`"], "RLink.m"}


But it's not a stand alone code. If someone has a simpler one, I would appreciate.



Answer



Minimal code


Here is a minimal code (partly adopted from RLink), to get you started. First, load JLink:


Needs["JLink`"]
InstallJava[]

Here is the code:


ClearAll[logIt];

logIt[logger_,msg_String,mode_String]:=
Block[{trace, debug, info, warn, error, fatal},
With[{
method = mode /. {
"TRACE" -> trace,
"DEBUG" -> debug,
"INFO" -> info,
"WARN" -> warn,
"FATAL" -> fatal,
_ :> Return[$Failed, Block]

}},
JavaBlock@logger@method[JavaNew["java.lang.String", msg]]
]
];

logIt[logger_,msg_String]:=logIt[logger, msg, "INFO"];

And the initLogger function:


ClearAll[initLogger];
initLogger[logger_, logFile_]:=

Module[{},
logger@removeAllAppenders[];
logger@addAppender[
JavaNew["org.apache.log4j.ConsoleAppender"]
];
logger@addAppender[
JavaNew[
"org.apache.log4j.FileAppender",
JavaNew["org.apache.log4j.SimpleLayout"],
logFile

]
];
logIt[logger, "Logger initialized"];
];

Example of use


Here is an example (I assume that log4j is already on the classpath, which is usually so, because it is used also internally in Mathematica):


LoadJavaClass["org.apache.log4j.Logger"]

Now create a logger instance:



logger = Logger`getLogger["MyApp"]

(* « JavaObject[org.apache.log4j.Logger]» *)

and the log file:


$logFile = FileNameJoin[{$TemporaryDirectory, "mylog.txt"}];

Now, initialize the logger:


initLogger[logger, $logFile]


You can test:


Import[$logFile, "String"]

(* "INFO - Logger initialized" *)

Now log something:


Do[
If[i < 5,
logIt[logger, "i = " <> ToString [i]],
logIt[logger, "fatal error", "FATAL"]; Break[]

],
{i, 1, 10}
]

check:


Import[$logFile, "String"]

"INFO - Logger initialized
INFO - i = 1
INFO - i = 2

INFO - i = 3
INFO - i = 4
FATAL - fatal error"

You can do more interesting things with loggers with log4j, but this example should get you started.


Comments

Popular posts from this blog

plotting - Plot 4D data with color as 4th dimension

I have a list of 4D data (x position, y position, amplitude, wavelength). I want to plot x, y, and amplitude on a 3D plot and have the color of the points correspond to the wavelength. I have seen many examples using functions to define color but my wavelength cannot be expressed by an analytic function. Is there a simple way to do this? Answer Here a another possible way to visualize 4D data: data = Flatten[Table[{x, y, x^2 + y^2, Sin[x - y]}, {x, -Pi, Pi,Pi/10}, {y,-Pi,Pi, Pi/10}], 1]; You can use the function Point along with VertexColors . Now the points are places using the first three elements and the color is determined by the fourth. In this case I used Hue, but you can use whatever you prefer. Graphics3D[ Point[data[[All, 1 ;; 3]], VertexColors -> Hue /@ data[[All, 4]]], Axes -> True, BoxRatios -> {1, 1, 1/GoldenRatio}]

plotting - Filling between two spheres in SphericalPlot3D

Manipulate[ SphericalPlot3D[{1, 2 - n}, {θ, 0, Pi}, {ϕ, 0, 1.5 Pi}, Mesh -> None, PlotPoints -> 15, PlotRange -> {-2.2, 2.2}], {n, 0, 1}] I cant' seem to be able to make a filling between two spheres. I've already tried the obvious Filling -> {1 -> {2}} but Mathematica doesn't seem to like that option. Is there any easy way around this or ... Answer There is no built-in filling in SphericalPlot3D . One option is to use ParametricPlot3D to draw the surfaces between the two shells: Manipulate[ Show[SphericalPlot3D[{1, 2 - n}, {θ, 0, Pi}, {ϕ, 0, 1.5 Pi}, PlotPoints -> 15, PlotRange -> {-2.2, 2.2}], ParametricPlot3D[{ r {Sin[t] Cos[1.5 Pi], Sin[t] Sin[1.5 Pi], Cos[t]}, r {Sin[t] Cos[0 Pi], Sin[t] Sin[0 Pi], Cos[t]}}, {r, 1, 2 - n}, {t, 0, Pi}, PlotStyle -> Yellow, Mesh -> {2, 15}]], {n, 0, 1}]

plotting - Mathematica: 3D plot based on combined 2D graphs

I have several sigmoidal fits to 3 different datasets, with mean fit predictions plus the 95% confidence limits (not symmetrical around the mean) and the actual data. I would now like to show these different 2D plots projected in 3D as in but then using proper perspective. In the link here they give some solutions to combine the plots using isometric perspective, but I would like to use proper 3 point perspective. Any thoughts? Also any way to show the mean points per time point for each series plus or minus the standard error on the mean would be cool too, either using points+vertical bars, or using spheres plus tubes. Below are some test data and the fit function I am using. Note that I am working on a logit(proportion) scale and that the final vertical scale is Log10(percentage). (* some test data *) data = Table[Null, {i, 4}]; data[[1]] = {{1, -5.8}, {2, -5.4}, {3, -0.8}, {4, -0.2}, {5, 4.6}, {1, -6.4}, {2, -5.6}, {3, -0.7}, {4, 0.04}, {5, 1.0}, {1, -6.8}, {2, -4.7}, {3, -1....