differential equations - Monitoring the Evaluation of NDSolve: time to finish estimation

My problem is quite simple: I run a NDSolve with a system of many ODEs, a calculation that will run for many hours, and I would like to know the progress of the calculation while it goes on.

More precisely, calling f[n][t] the functions to be solved in the interval {tin,tfin}, It will be sufficient to print at regular intervals t the value of Sum[f[n][t]] for example, and possibly to save them as well. As a side effect, this will also give me an idea of when the calculation is going to end.

However I don't want to sacrifice a significant amount of runtime for this monitoring. One option could be really to split the calculation in intervals (a table of NDSolve) and print the intermediate results at each point. But I am afraid to have a significant overhead due to the reconstruction of the system of equations every time (I also use the method "EquationSimplification"->"Solve" which I believe transforms symbolically the system before integrating it) so I hope that some wizards among you could help me out providing an efficient solution to this problem using perhaps EvaluationMonitor or EventLocator or StateData ?

Any example will be appreciated.

EDIT: here is an example I just invented (the real example is more complicated).

M = 100;
Clear[P];
eqns := Table[
   P[k]'[t] == -(1/k) P[k][t] - 
     P[k][t]^2 Sum[Exp[-(k - q)^2/M] P[q][t], {q, 1, M}]
   , {k, 1, M}];


initial = Table[P[k][0] == 0.2, {k, 1, M}];

spos = NDSolve[Join[{eqns, initial}], 
   Table[P[k], {k, 1, M}], {t, 0, 100}, 
   Method -> {"EquationSimplification" -> "Solve"}, 
   PrecisionGoal -> 3, AccuracyGoal -> 3];

Comments

plotting - Plot 4D data with color as 4th dimension

I have a list of 4D data (x position, y position, amplitude, wavelength). I want to plot x, y, and amplitude on a 3D plot and have the color of the points correspond to the wavelength. I have seen many examples using functions to define color but my wavelength cannot be expressed by an analytic function. Is there a simple way to do this? Answer Here a another possible way to visualize 4D data: data = Flatten[Table[{x, y, x^2 + y^2, Sin[x - y]}, {x, -Pi, Pi,Pi/10}, {y,-Pi,Pi, Pi/10}], 1]; You can use the function Point along with VertexColors . Now the points are places using the first three elements and the color is determined by the fourth. In this case I used Hue, but you can use whatever you prefer. Graphics3D[ Point[data[[All, 1 ;; 3]], VertexColors -> Hue /@ data[[All, 4]]], Axes -> True, BoxRatios -> {1, 1, 1/GoldenRatio}]

plotting - Filling between two spheres in SphericalPlot3D

Manipulate[ SphericalPlot3D[{1, 2 - n}, {θ, 0, Pi}, {ϕ, 0, 1.5 Pi}, Mesh -> None, PlotPoints -> 15, PlotRange -> {-2.2, 2.2}], {n, 0, 1}] I cant' seem to be able to make a filling between two spheres. I've already tried the obvious Filling -> {1 -> {2}} but Mathematica doesn't seem to like that option. Is there any easy way around this or ... Answer There is no built-in filling in SphericalPlot3D . One option is to use ParametricPlot3D to draw the surfaces between the two shells: Manipulate[ Show[SphericalPlot3D[{1, 2 - n}, {θ, 0, Pi}, {ϕ, 0, 1.5 Pi}, PlotPoints -> 15, PlotRange -> {-2.2, 2.2}], ParametricPlot3D[{ r {Sin[t] Cos[1.5 Pi], Sin[t] Sin[1.5 Pi], Cos[t]}, r {Sin[t] Cos[0 Pi], Sin[t] Sin[0 Pi], Cos[t]}}, {r, 1, 2 - n}, {t, 0, Pi}, PlotStyle -> Yellow, Mesh -> {2, 15}]], {n, 0, 1}]

plotting - Mathematica: 3D plot based on combined 2D graphs

I have several sigmoidal fits to 3 different datasets, with mean fit predictions plus the 95% confidence limits (not symmetrical around the mean) and the actual data. I would now like to show these different 2D plots projected in 3D as in but then using proper perspective. In the link here they give some solutions to combine the plots using isometric perspective, but I would like to use proper 3 point perspective. Any thoughts? Also any way to show the mean points per time point for each series plus or minus the standard error on the mean would be cool too, either using points+vertical bars, or using spheres plus tubes. Below are some test data and the fit function I am using. Note that I am working on a logit(proportion) scale and that the final vertical scale is Log10(percentage). (* some test data *) data = Table[Null, {i, 4}]; data[[1]] = {{1, -5.8}, {2, -5.4}, {3, -0.8}, {4, -0.2}, {5, 4.6}, {1, -6.4}, {2, -5.6}, {3, -0.7}, {4, 0.04}, {5, 1.0}, {1, -6.8}, {2, -4.7}, {3, -1....

Blog

Search This Blog