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mac os x - InstallR on OS X with external R installation


How do I InstallR on OS X to use my already installed and configured R?


Simply using


InstallR["RHomeLocation" -> "/Library/Frameworks/R.framework/Resources"]


results in


$Failed
InstallR::nopaclet: Could not find RLink runtime installed. Please use RLinkResourcesInstall to install it

How do I connect Mathematica to my installed R? Do I have to install a separate R for Mathematica?



Answer



Try like this in a fresh kernel:


Needs["RLink`"]


SetEnvironment["DYLD_LIBRARY_PATH" -> "/Library/Frameworks/R.framework/Resources/lib"];

InstallR["RHomeLocation" -> "/Library/Frameworks/R.framework/Resources"];

Update: With Mathematica 10.0.1 (but not 10.0.0), use


InstallR["RHomeLocation" -> "/Library/Frameworks/R.framework/Resources", "RVersion" -> 3]; (* for M 10.0.1 *)

This works if you are using the R distribution from http://www.r-project.org/, but if I recall correctly some people said it didn't work with some other R distributions (e.g. MacPorts's R). I only tried with the official R.


To check that you are indeed running with the chosen version of R, evaluate


REvaluate["R.version.string"]


which on my system returns {"R version 3.0.3 (2014-03-06)"} (as I have R 3.0.3).


I described this before here.



Note: With Mathematica 9.0.1 it is necessary to first make sure that RLink is set up and working with Mathematica's internal R distribution, as described in the user guide. Once that is done, an external R can be used as above. Otherwise InstallR might exit with an InstallR::nopaclet error.


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