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list manipulation - Applying filters to data of the form {{x1,y1},{x2,y2},...}


When working with any kind of measurement data there is (at least) for me always a phase where I have to play around with different filters (such as MedianFilter, MeanFilter, LowpassFilter ...) to figure out how to improve my data in some aspect (filtering noise, detecting outliers, detecting edges...). Two things have always bugged me when using the build-in filter functions:




  1. filters expect simple list like {y1,y2,y3,y4} when (more often than not) measurement data is of the form {{x1,y1}, {x2, y2}, {x3, y3}, {x4, y4}} where $x_i$ is some index (e.g. time or frequency) and $y_i$ is the respective measurement (e.g. voltage or force)




  2. filters have a syntax of the form someFilter[data, parameters] and not an operator form someFilter[parameters][data]





This leads often to a Kuddelmuddel of [[]] mixed with a bunch of Transpose and/or intermediate (global) variables


What is a stylistically good way to deal with this?



Answer



The answer I came up with is


Clear@applyFilter;
applyFilter[filter_] := Function[data,
Module[{freq, value},
{freq, value} = Transpose@data;

Transpose[{freq, filter@value}]
]
];

applyFilter[filters__] := RightComposition @@ (applyFilter /@ {filters})

applyFilter[{filter_, n_}] := Nest[applyFilter[filter], # , n] &

The features are:





  1. Applying filters in operator form


    applyFilter[MedianFilter[#, 5] &] @ someData


  2. Chaining filters together


    myfilter = applyFilter[
    MedianFilter[#, 5] &,
    MeanFilter[#,2 ] &
    ]

    (*used with myfilter @ someData *)


  3. Multiple filter passes


    applyFilter[{MeanFilter[#, 2] &, numberOfPasses}]


and can be used on some example data


example = Transpose[{Range@100, Accumulate@(RandomVariate[NormalDistribution[0, 1], 100])}]


example data


with for instance a MedianFilter to flatten the peaks/remove outliers


applyFilter[MedianFilter[#, 3] &] @ example

median filter


or a MedianFilter followed up by a MeanFilter (this can be advantageous compared to using only a MeanFilter if there are huge outliers in the data)


applyFilter[MedianFilter[#, 3] &, MeanFilter[#, 2] &] @ example

median filter + mean filter


or multiple passes of some filter (1 pass through MedianFilter and 10 passes through MeanFilter)



applyFilter[MedianFilter[#, 3] &, {MeanFilter[#, 2] &, 10}] @ example

median + 10 passes mean


For me at least, something like applyFilter makes using the build-in filters a lot more user-friendy when experimenting with data.


Manipulate[
ListLinePlot[{
example,
applyFilter[MedianFilter[#, r] &, {MeanFilter[#, r1] &, n}]@example}],

{{r, 0, "Medianfilter radius"}, 0, 10, 1}, Delimiter,

{{n, 0, "Meanfilter passes"}, 0, 10, 1},
{{r1, 0, "Meanfilter radius"}, 0, 10, 1}]

gif


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