Skip to main content

kernel - Aborting evaluation when the memory exceeds a certain limit


Sometimes when generating a lot of data the memory usage shoots beyond its physical realm and my laptop freezes. There is no way to stop Mathematica when this happens. Task manager (or its equivalent in other OSes) won't even start.


I was wondering if it's possible to set a threshold somewhere in Mathematica to stop it automatically after a certain amount of memory.




Answer



Since one may not always accurately predict when MemoryContrained is needed, I recommend setting up a watch-dog task. Belisarius described how to do this here in answer to my question. I will reproduce it below as answers that are merely links are discouraged.




In Mathematica 8 you could start a memory watchdog, something along the lines of:


maxMemAllowed        = 1.3 1024^3; (*1.3 GB*);
intervalBetweenTests = 1; (*seconds*)
iAmAliveSignal       = 0;
Dynamic[iAmAliveSignal]
RunScheduledTask[

       If[MemoryInUse[] > maxMemAllowed , Quit[], iAmAliveSignal++],      
       intervalBetweenTests];

Remember to run


RemoveScheduledTask[ScheduledTasks[]];

to disable it.



Comments

Post a Comment

Popular posts from this blog

functions - Get leading series expansion term?

Given a function f[x] , I would like to have a function leadingSeries that returns just the leading term in the series around x=0 . For example: leadingSeries[(1/x + 2)/(4 + 1/x^2 + x)] x and leadingSeries[(1/x + 2 + (1 - 1/x^3)/4)/(4 + x)] -(1/(16 x^3)) Is there such a function in Mathematica? Or maybe one can implement it efficiently? EDIT I finally went with the following implementation, based on Carl Woll 's answer: lds[ex_,x_]:=( (ex/.x->(x+O[x]^2))/.SeriesData[U_,Z_,L_List,Mi_,Ma_,De_]:>SeriesData[U,Z,{L[[1]]},Mi,Mi+1,De]//Quiet//Normal) The advantage is, that this one also properly works with functions whose leading term is a constant: lds[Exp[x],x] 1 Answer Update 1 Updated to eliminate SeriesData and to not return additional terms Perhaps you could use: leadingSeries[expr_, x_] := Normal[expr /. x->(x+O[x]^2) /. a_List :> Take[a, 1]] Then for your examples: leadingSeries[(1/x + 2)/(4 + 1/x^2 + x), x] leadingSeries[Exp[x], x] leadingSeries[(1/x + 2 + (1 - 1/x...
Post a Comment
Read more

mathematical optimization - Minimizing using indices, error: Part::pkspec1: The expression cannot be used as a part specification

I want to use Minimize where the variables to minimize are indices pointing into an array. Here a MWE that hopefully shows what my problem is. vars = u@# & /@ Range[3]; cons = Flatten@ { Table[(u[j] != #) & /@ vars[[j + 1 ;; -1]], {j, 1, 3 - 1}], 1 vec1 = {1, 2, 3}; vec2 = {1, 2, 3}; Minimize[{Total@((vec1[[#]] - vec2[[u[#]]])^2 & /@ Range[1, 3]), cons}, vars, Integers] The error I get: Part::pkspec1: The expression u[1] cannot be used as a part specification. >> Answer Ok, it seems that one can get around Mathematica trying to evaluate vec2[[u[1]]] too early by using the function Indexed[vec2,u[1]] . The working MWE would then look like the following: vars = u@# & /@ Range[3]; cons = Flatten@{ Table[(u[j] != #) & /@ vars[[j + 1 ;; -1]], {j, 1, 3 - 1}], 1 vec1 = {1, 2, 3}; vec2 = {1, 2, 3}; NMinimize[ {Total@((vec1[[#]] - Indexed[vec2, u[#]])^2 & /@ R...
Post a Comment
Read more

How to remap graph properties?

Graph objects support both custom properties, which do not have special meanings, and standard properties, which may be used by some functions. When importing from formats such as GraphML, we usually get a result with custom properties. What is the simplest way to remap one property to another, e.g. to remap a custom property to a standard one so it can be used with various functions? Example: Let's get Zachary's karate club network with edge weights and vertex names from here: http://nexus.igraph.org/api/dataset_info?id=1&format=html g = Import[ "http://nexus.igraph.org/api/dataset?id=1&format=GraphML", {"ZIP", "karate.GraphML"}] I can remap "name" to VertexLabels and "weights" to EdgeWeight like this: sp[prop_][g_] := SetProperty[g, prop] g2 = g // sp[EdgeWeight -> (PropertyValue[{g, #}, "weight"] & /@ EdgeList[g])] // sp[VertexLabels -> (# -> PropertyValue[{g, #}, "name"]...
Post a Comment
Read more