Skip to main content

list manipulation - Performance of Select


I have a dataset of 3D coordinates with a length of about $ 4\times 10^6 $.


From this volume I am sequentially selecting coordinates along one axis and manipulating this subset.


My question: Can the Select function be replaced by something that is faster.


Here is the example code with the needed time for selection:



SeedRandom[1];

coordinates = RandomReal[10, {4000000, 3}]; // AbsoluteTiming

{0.0989835, Null}

selectedCoordinates = Select[coordinates, #[[1]] > 6 && #[[1]] < 7 & ]; // AbsoluteTiming

{5.88215, Null}


Dimensions[selectedCoordinates]

{400416, 3}

Answer



res1 = Select[coordinates, #[[1]] > 6 && #[[1]] < 7 &]; // 
AbsoluteTiming // First


6.997629




res2 = Select[coordinates, 6 < #[[1]] < 7 &]; // AbsoluteTiming // First


4.676356



res3 = Pick[coordinates, 6 < # < 7 & /@ coordinates[[All, 1]]]; // 
AbsoluteTiming // First


5.266651




res4 = Pick[coordinates, (1 - UnitStep[# - 7]) (1 - UnitStep[6 - #]) &@
coordinates[[All, 1]], 1]; // AbsoluteTiming // First


0.353154



res6 = compiled[coordinates]; // AbsoluteTiming // First



0.667676



where


compiled = Compile[{{coords, _Real, 2}}, Select[coords, #[[1]] > 6 && #[[1]] < 7 &]]`

is the method suggested in Leonid's comment (without the option `CompilationTarget -> "C").


Equal[res1, res2, res3, res4, res5, res6]


True




Comments

Popular posts from this blog

front end - keyboard shortcut to invoke Insert new matrix

I frequently need to type in some matrices, and the menu command Insert > Table/Matrix > New... allows matrices with lines drawn between columns and rows, which is very helpful. I would like to make a keyboard shortcut for it, but cannot find the relevant frontend token command (4209405) for it. Since the FullForm[] and InputForm[] of matrices with lines drawn between rows and columns is the same as those without lines, it's hard to do this via 3rd party system-wide text expanders (e.g. autohotkey or atext on mac). How does one assign a keyboard shortcut for the menu item Insert > Table/Matrix > New... , preferably using only mathematica? Thanks! Answer In the MenuSetup.tr (for linux located in the $InstallationDirectory/SystemFiles/FrontEnd/TextResources/X/ directory), I changed the line MenuItem["&New...", "CreateGridBoxDialog"] to read MenuItem["&New...", "CreateGridBoxDialog", MenuKey["m", Modifiers-...

How to thread a list

I have data in format data = {{a1, a2}, {b1, b2}, {c1, c2}, {d1, d2}} Tableform: I want to thread it to : tdata = {{{a1, b1}, {a2, b2}}, {{a1, c1}, {a2, c2}}, {{a1, d1}, {a2, d2}}} Tableform: And I would like to do better then pseudofunction[n_] := Transpose[{data2[[1]], data2[[n]]}]; SetAttributes[pseudofunction, Listable]; Range[2, 4] // pseudofunction Here is my benchmark data, where data3 is normal sample of real data. data3 = Drop[ExcelWorkBook[[Column1 ;; Column4]], None, 1]; data2 = {a #, b #, c #, d #} & /@ Range[1, 10^5]; data = RandomReal[{0, 1}, {10^6, 4}]; Here is my benchmark code kptnw[list_] := Transpose[{Table[First@#, {Length@# - 1}], Rest@#}, {3, 1, 2}] &@list kptnw2[list_] := Transpose[{ConstantArray[First@#, Length@# - 1], Rest@#}, {3, 1, 2}] &@list OleksandrR[list_] := Flatten[Outer[List, List@First[list], Rest[list], 1], {{2}, {1, 4}}] paradox2[list_] := Partition[Riffle[list[[1]], #], 2] & /@ Drop[list, 1] RM[list_] := FoldList[Transpose[{First@li...

plotting - How to draw lines between specified dots on ListPlot?

I would like to create a plot where I have unconnected dots and some connected. So far, I have figured out how to draw the dots. My code is the following: ListPlot[{{1, 1}, {2, 2}, {3, 3}, {4, 4}, {1, 4}, {2, 5}, {3, 6}, {4, 7}, {1, 7}, {2, 8}, {3, 9}, {4, 10}, {1, 10}, {2, 11}, {3, 12}, {4,13}, {2.5, 7}}, Ticks -> {{1, 2, 3, 4}, None}, AxesStyle -> Thin, TicksStyle -> Directive[Black, Bold, 12], Mesh -> Full] I have thought using ListLinePlot command, but I don't know how to specify to the command to draw only selected lines between the dots. Do have any suggestions/hints on how to do that? Thank you. Answer One possibility would be to use Epilog with Line : ListPlot[ {{1, 1}, {2, 2}, {3, 3}, {4, 4}, {1, 4}, {2, 5}, {3, 6}, {4, 7}, {1, 7}, {2, 8}, {3, 9}, {4, 10}, {1, 10}, {2, 11}, {3, 12}, {4, 13}, {2.5, 7}}, Ticks -> {{1, 2, 3, 4}, None}, AxesStyle -> Thin, TicksStyle -> Directive[Black, Bold, 12], Mesh -> Full, Epilog -> { Line[ ...